I was wondering if you were talking about the lock code.
There is likely no correlation between "lock code" and wafer numbers or positions. In fact, if there were, it would be unreasonably easy to figure out which wafers were used in which lock. In other words.... If "lock code 1234" corresponded to wafers numbered 1-2-3-4 in that order, then that would be all you would need to make a key for that lock. Not much security there.
I think the "lock code" is just that... A code. Recorded and stamped into the body when the lock was populated with random wafer numbers in random positions. Just because the lock code can seemingly go from 0000 to 9999, I don't think there is anything to be gleaned from that number as far as the wafers are concerned. And yes, there could be duplicates. But without the code book, that's fine. How would you know?
If you have four wafers in your early hatch lock and there are four different wafers, then you have 256 different possibilities. I think I have five wafers in my later hatch lock which provides 1024 possibilities. Seems like they added an additional tumbler to the hatch just like they did with the ignition lock.