Wow, zKars, very astute. You are correct, this window was indeed from another vehicle. The only reason I didn't want to use the glass that came with the car is because it has more substantial scratches along the bottom of the glass.
The year of the other vehicle that that the door glass came out of is unknown, I bought a complete door and took the glass out of it. Upon closer inspection of the door, the inner bracing looks to be different between the donor door and my door:
Donor:
My car:
You are also correct that the guides are indeed slightly different
Donor window rear guide:
My car glass rear guide:
Donor front guide:
My car front guide:
Comparison photo, donor on bottom, my car on top
So it looks like I'll need to use the glass that came with my car, or could I just swap to the regulator that came with the donor door? Not sure what condition it's currently in. I'm assuming the donor door was off a 240z.