re: using the stock head then swapping in the new one -
i've always liked incremental upgrades vs. the "all at once" approach. for example in the bike world, you know that with a new bike you're going to swap pipes, re-map the ecu, do head work, fiddle w/timing to get the most ponies, and a lot of guys will have that all done at the dealer before they pick it up. but then you only get one shot, and no matter how hot the motor is you always wind up wanting more in 6 months, and the next stages of performance get much more expensive. i prefer to ride it stock, then in 6 months swap the pipes, enjoy the nice boost, then in a few months do some head work, enjoy the nice boost, then in a few months do the timing/tuning... you get the idea - kinda like opening xmas presents one-a-week vs. all on xmas morning.
so if you run the stock head, enjoy your lovely new motor, tune it really well, then in a month or two do an afternoon head swap it's a free kick in the pants that you get to enjoy. also, you will have a nice butt-dyno comparison to measure the new head improvement.
i did my f54-p79 build w/stock cam for this reason - been driving it and loving it for the past six months knowing that i'm gonna put in a hot cam later and i'm looking forward to the extra kick. after all, the LAST thing i want is to be "done" working on it, right? where's the fun in that??